Untitled ADLA run

Job adla_20260707_065700_a7ac71b8 · ADLA 0.1.7-hardening

Anthropological and educational research use only. ADLA does not diagnose scurvy or vitamin C deficiency; interpret genomic, epigenomic, structural-variant, phasing, workflow-import, microbial/context, and ancient-DNA authentication signals alongside archaeological context, preservation quality, osteological/isotopic evidence, historical diet, contamination controls, damage/authenticity metrics, and biochemical data where available.

Interpretation summary

Overall confidence: insufficient for deficiency call

Sequencing cannot directly measure vitamin C status. In ADLA, genomic and epigenomic findings are anthropological research signals that require archaeological, osteological, isotopic, ecological, historical, and preservation context before interpretation.
Anthropological context mode: modern or unknown research context; corroboration score 0/100.
No curated ascorbate-transporter rsID hits were detected in parsed VCF inputs. This is not proof of absence unless target regions were callable.
No mosdepth/coverage target report was parsed. Variant absence and methylation absence should be treated as unknown until target callability is measured.
No target-region modified-base summaries were available. Upload Modkit bedMethyl or run modkit from modBAM through the CLI pipeline.

Priority variants

No priority variants available.

Anthropological context

{
    "sample_age_class": "unknown",
    "sample_material": "unknown",
    "preservation_context": "",
    "anthropological_corroboration_score": 0,
    "score_components": [
        {
            "component": "unknown_sample_age_penalty",
            "points": -8,
            "note": "Sample age class is unknown, reducing anthropological interpretability."
        }
    ],
    "interpretation_mode": "modern_or_unknown_research_context",
    "methylation_mode": "direct_modbase_exploratory_when_metadata_complete"
}

Authentication aggregate

{
    "report_count": 0,
    "tools_detected": [],
    "status": "not_imported",
    "has_damage_metric": false,
    "has_contamination_metric": false,
    "has_endogenous_fraction": false,
    "has_pmd_metric": false,
    "max_contamination_percent": null,
    "metrics": [],
    "flags": []
}